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ABC_GWH

A cookbook to study Genome Wide Heterogeneity in introgression rates

The following cited articles are crucial methodological advances for inferences in population genomics, seven must-read articles for students.

.Beaumont MA, Zhang W, Balding DJ (2002) Approximate bayesian computation in population genetics. Genetics 162: 2025–2035.

.Hudson RR (2002) Generating samples under a wright-fisher neutral model of genetic variation. Bioinformatics 18: 337–338.

.Thornton K (2003) Libsequence: a C++ class library for evolutionary genetic analysis. Bioinformatic(17):2325-7.

.Fagundes NJR, Ray N, Beaumont M, Neuenschwander S, Salzano FM, et al. (2007) Statistical evaluation of alternative models of human evolution. Proc Natl Acad Sci U S A 104: 17614–17619.

.Ross-Ibarra J, Wright SI, Foxe JP, Kawabe A, DeRose-Wilson L, et al. (2008) Patterns of polymorphism and demographic history in natural populations of arabidopsis lyrata. PLoS One 3:e2411.

.Ross-Ibarra J, Tenaillon M, Gaut BS (2009) Historical divergence and gene flow in the genus zea. Genetics 181: 1399–1413.

.Roux C, Tsagkogeorga G, Bierne N, Galtier N (2013) Crossing the species barrier: Genomic hotspots of introgression between two highly divergent Ciona intestinalis species. Molecular biology and evolution

.Csillery K, Francois O, Blum MGB (2012) abc: an r package for approximate bayesian computa-
tion (abc). Methods in Ecology and Evolution.